ProPr54; Prediction of Sigma54 dependent Promoters and Regulon

ProPr54 update November 13, 2024; optimized model implemented
Prediction of Sigma54 regulon in bacterial genomes consists of 4 steps:
  • Prediction of Sigma54 promoters based on Machine Learning models
  • Functional classification of proteins on the basis of our extended UniProt database
  • Operon prediction
  • Combine promoters, regulon proteins, and operons


Input
  • Option 1: Sigma54 Regulon in bacterial genomes
    • Upload genome sequence and associated annotation file (.fna and .gff)
    • A GFF for new genomes can be created by our FACoP web server
  • Option 2: Sigma54 promoters in short sequences

Select:
Select or drag and drop files below. (This web server accepts files up to 8Mb)


DNA (.fna, .fasta or .fa) not uploaded
GFF (.gff or .gff3) not uploaded
             


Annotation of the Sigma54 regulon is started, please wait

May 2024. Tristan Achterberg and Anne de Jong [anne.de.jong .. rug.nl]. Department of Molecular Genetics,
University of Groningen, Nijenborgh 7, 9747 AG Groningen, the Netherlands